SNP Report
Basic Infomation
| Name | rs16836525 dbSNP |
|---|---|
| Location | chr:1,154898899 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 19)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1061122 | 1.00[CHB][hapmap] |
| rs10908443 | 1.00[CHB][hapmap] |
| rs12078687 | 1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.95[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs1218554 | 1.00[CHB][hapmap] |
| rs1218584 | 1.00[CHB][hapmap] |
| rs1218585 | 1.00[CHB][hapmap] |
| rs1218587 | 1.00[CHB][hapmap] |
| rs1218589 | 1.00[CHB][hapmap] |
| rs12760148 | 1.00[CHB][hapmap] |
| rs2878412 | 1.00[CHB][hapmap] |
| rs4492614 | 1.00[JPT][hapmap] |
| rs4845396 | 1.00[CHB][hapmap] |
| rs4845397 | 1.00[CHB][hapmap] |
| rs4845402 | 1.00[CHB][hapmap] |
| rs60707099 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6682335 | 1.00[CHB][hapmap] |
| rs906596 | 1.00[CHB][hapmap] |
| rs906597 | 1.00[CHB][hapmap] |
| rs954785 | 1.00[JPT][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PMVK | Distal transcriptional regulation |
| SHC1 | Distal transcriptional regulation |
| CKS1B | Distal transcriptional regulation |
| LENEP | Distal transcriptional regulation |
| ADAR | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014