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rVarBase
SNP Report
Basic Infomation
Name
rs12078687  
dbSNP
Location
chr:1,154885095
Allele
T/C
LD-proxy of rSNPs(r
2
>0.8) (count: 7)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs12059540
1.00[MEX][hapmap]
rs12064595
1.00[MEX][hapmap]
rs12092479
1.00[MEX][hapmap]
rs16836525
1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.95[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2232635
1.00[MEX][hapmap]
rs60707099
1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9236
1.00[MEX][hapmap]
rSNP related genes
Symbol
Regulation type
PMVK
Distal transcriptional regulation
ADAM15
Distal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)