SNP Report
Basic Infomation
| Name | rs12059540 dbSNP |
|---|---|
| Location | chr:1,154845256 |
| Allele | T/G |
LD-proxy of rSNPs(r2>0.8) (count: 16)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs12063335 | 1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12064595 | 1.00[MEX][hapmap] |
| rs12078687 | 1.00[MEX][hapmap] |
| rs12092479 | 1.00[MEX][hapmap] |
| rs2232635 | 1.00[MEX][hapmap] |
| rs60537431 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6692661 | 1.00[EUR][1000 genomes] |
| rs72993366 | 1.00[EUR][1000 genomes] |
| rs72993369 | 1.00[EUR][1000 genomes] |
| rs72993370 | 1.00[EUR][1000 genomes] |
| rs72993373 | 0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72993374 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72993402 | 0.85[EUR][1000 genomes] |
| rs72995417 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72995418 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9236 | 1.00[MEX][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| KCNN3 | Proximal transcriptional regulation |
| ZBTB7B | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014