SNP Report
Basic Infomation
| Name | rs4845397 dbSNP |
|---|---|
| Location | chr:1,154832304 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 22)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1061122 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs10908443 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes] |
| rs11264302 | 1.00[JPT][hapmap] |
| rs11264303 | 1.00[JPT][hapmap] |
| rs11582128 | 1.00[JPT][hapmap] |
| rs1218554 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes] |
| rs1218584 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs1218585 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs1218587 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes] |
| rs1218588 | 0.83[ASN][1000 genomes] |
| rs1218589 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes] |
| rs12760148 | 1.00[CHB][hapmap] |
| rs16836525 | 1.00[CHB][hapmap] |
| rs2878412 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes] |
| rs4845395 | 0.83[ASN][1000 genomes] |
| rs4845396 | 1.00[CHB][hapmap] |
| rs4845402 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs4845675 | 0.83[ASN][1000 genomes] |
| rs6660884 | 1.00[JPT][hapmap] |
| rs6682335 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes] |
| rs906596 | 1.00[CHB][hapmap] |
| rs906597 | 1.00[CHB][hapmap];1.00[CHD][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| KCNN3 | Proximal transcriptional regulation |
| KCNN3 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 8)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014