SNP Report
Basic Infomation
| Name | rs12942 dbSNP |
|---|---|
| Location | chr:20,44717965 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 26)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10774 | 0.87[AFR][1000 genomes];0.92[AMR][1000 genomes] |
| rs11086991 | 0.83[AMR][1000 genomes] |
| rs11086993 | 0.83[AMR][1000 genomes] |
| rs3918260 | 0.83[AMR][1000 genomes] |
| rs3918265 | 0.83[AMR][1000 genomes] |
| rs3918266 | 0.83[AMR][1000 genomes] |
| rs58727166 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs58935660 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6094240 | 0.83[AMR][1000 genomes] |
| rs6094247 | 0.84[AFR][1000 genomes];0.92[AMR][1000 genomes] |
| rs6094250 | 0.84[AFR][1000 genomes];0.92[AMR][1000 genomes] |
| rs6104433 | 0.83[AMR][1000 genomes] |
| rs6104434 | 0.83[AMR][1000 genomes] |
| rs6104441 | 0.83[AMR][1000 genomes] |
| rs6104447 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6104449 | 0.84[AFR][1000 genomes];0.92[AMR][1000 genomes] |
| rs6104450 | 0.84[AFR][1000 genomes];0.92[AMR][1000 genomes] |
| rs6104451 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6104453 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6104454 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6104455 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6104458 | 0.87[AFR][1000 genomes];0.92[AMR][1000 genomes] |
| rs6104459 | 0.85[AFR][1000 genomes] |
| rs6104461 | 0.92[AMR][1000 genomes] |
| rs7272980 | 0.83[AMR][1000 genomes] |
| rs9653615 | 0.84[AFR][1000 genomes];0.92[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| STX5 | Distal transcriptional regulation |
| ADAM10 | Distal transcriptional regulation |
| ZNF335 | Distal transcriptional regulation |
| ENSG00000203346 | Distal transcriptional regulation |
| SLC12A5 | Distal transcriptional regulation |
| ENSG00000204044 | Distal transcriptional regulation |
| ENSG00000240742 | Distal transcriptional regulation |
| CD40 | Distal transcriptional regulation |
| SYS1 | Distal transcriptional regulation |
| SYS1-DBNDD2 | Distal transcriptional regulation |
| WFDC3 | Distal transcriptional regulation |
| DNTTIP1 | Distal transcriptional regulation |
| ACOT8 | Distal transcriptional regulation |
| ZSWIM3 | Distal transcriptional regulation |
| PCIF1 | Distal transcriptional regulation |
| MMP9 | Distal transcriptional regulation |
| SLC35C2 | Distal transcriptional regulation |
| NCOA5 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014