SNP Report
Basic Infomation
| Name | rs6104449 dbSNP |
|---|---|
| Location | chr:20,44696929 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 16)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10774 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12942 | 0.84[AFR][1000 genomes];0.92[AMR][1000 genomes] |
| rs58727166 | 0.89[AFR][1000 genomes];0.92[AMR][1000 genomes] |
| rs58935660 | 0.89[AFR][1000 genomes];0.92[AMR][1000 genomes] |
| rs6094247 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6094250 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6104447 | 0.89[AFR][1000 genomes];0.92[AMR][1000 genomes] |
| rs6104450 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6104451 | 0.92[YRI][hapmap];0.87[AFR][1000 genomes];0.92[AMR][1000 genomes] |
| rs6104453 | 0.92[ASW][hapmap];0.95[MKK][hapmap];0.92[YRI][hapmap];0.87[AFR][1000 genomes];0.92[AMR][1000 genomes] |
| rs6104454 | 0.87[AFR][1000 genomes];0.92[AMR][1000 genomes] |
| rs6104455 | 0.87[AFR][1000 genomes];0.92[AMR][1000 genomes] |
| rs6104458 | 0.95[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6104459 | 0.91[YRI][hapmap];0.91[AFR][1000 genomes];0.86[AMR][1000 genomes] |
| rs6104461 | 0.85[AMR][1000 genomes] |
| rs9653615 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| NCOA5 | Distal transcriptional regulation |
| NCOA5 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| TCTN1 | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014