SNP Report
Basic Infomation
| Name | rs12580859 dbSNP |
|---|---|
| Location | chr:12,48919000 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 32)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11168613 | 1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12578360 | 0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs12579133 | 0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs12580814 | 0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs12581223 | 0.92[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs12582961 | 1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17234937 | 0.94[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs4397895 | 1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4426170 | 0.81[EUR][1000 genomes] |
| rs4547144 | 1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4554937 | 1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs55983865 | 0.98[EUR][1000 genomes] |
| rs56191575 | 1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs61940764 | 1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs61940768 | 1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs61940773 | 1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs61940774 | 1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs61940775 | 1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs61940776 | 1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs61940777 | 0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61940779 | 0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61940780 | 0.94[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs61940820 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs61940821 | 1.00[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs61941963 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61941972 | 0.84[EUR][1000 genomes] |
| rs61942783 | 0.87[AFR][1000 genomes] |
| rs61942784 | 0.87[AFR][1000 genomes] |
| rs61942813 | 0.81[EUR][1000 genomes] |
| rs61942828 | 0.87[AFR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs61942829 | 0.94[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs61942830 | 1.00[AFR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| OR8S1 | Proximal transcriptional regulation |
| ENSG00000198678 | Distal transcriptional regulation |
| CACNB3 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014