SNP Report
Basic Infomation
| Name | rs12580814 dbSNP |
|---|---|
| Location | chr:12,48956032 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 23)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11168613 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.90[ASN][1000 genomes] |
| rs11834413 | 1.00[CHB][hapmap] |
| rs12579133 | 1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12579547 | 1.00[CHB][hapmap] |
| rs12580859 | 0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs12581223 | 0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs12582811 | 1.00[CHB][hapmap];0.83[ASN][1000 genomes] |
| rs12582961 | 0.83[AMR][1000 genomes];0.90[ASN][1000 genomes] |
| rs17234937 | 0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs2705127 | 1.00[JPT][hapmap] |
| rs4397895 | 0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes] |
| rs4426170 | 0.82[CEU][hapmap];1.00[JPT][hapmap] |
| rs4547144 | 0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes] |
| rs4554937 | 0.90[ASN][1000 genomes] |
| rs61940768 | 0.80[ASN][1000 genomes] |
| rs61940774 | 0.80[ASN][1000 genomes] |
| rs61940775 | 0.80[ASN][1000 genomes] |
| rs61940777 | 0.90[ASN][1000 genomes] |
| rs61940779 | 0.90[ASN][1000 genomes] |
| rs61940820 | 0.83[AMR][1000 genomes] |
| rs61940821 | 0.83[AMR][1000 genomes] |
| rs61941963 | 0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs61941972 | 0.95[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000198678 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014