SNP Report
Basic Infomation
| Name | rs12528427 dbSNP |
|---|---|
| Location | chr:6,90893900 |
| Allele | A/T |
LD-proxy of rSNPs(r2>0.8) (count: 16)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10806425 | 1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[JPT][hapmap];0.98[ASN][1000 genomes] |
| rs10944480 | 1.00[ASN][1000 genomes] |
| rs10944481 | 1.00[YRI][hapmap] |
| rs12110780 | 0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12526057 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1319433 | 1.00[YRI][hapmap] |
| rs16882568 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes] |
| rs2064870 | 1.00[YRI][hapmap] |
| rs2501718 | 1.00[CHB][hapmap];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs34460816 | 0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3734660 | 1.00[YRI][hapmap] |
| rs4706359 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs4706360 | 1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs4997561 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];1.00[ASN][1000 genomes] |
| rs60649859 | 0.86[EUR][1000 genomes] |
| rs6919587 | 0.83[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| BACH2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014