SNP Report
Basic Infomation
| Name | rs3734660 dbSNP |
|---|---|
| Location | chr:6,90916345 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 17)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10806425 | 0.84[CEU][hapmap];0.89[GIH][hapmap];0.88[MEX][hapmap];0.93[TSI][hapmap];0.91[EUR][1000 genomes] |
| rs10944480 | 0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs10944481 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs11967697 | 0.88[ASN][1000 genomes] |
| rs12209546 | 0.81[LWK][hapmap] |
| rs12525752 | 0.87[ASN][1000 genomes] |
| rs12528427 | 1.00[YRI][hapmap] |
| rs1319433 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17585295 | 0.81[CEU][hapmap] |
| rs17712288 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs2064870 | 0.96[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs4706360 | 0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs4707609 | 0.81[CEU][hapmap] |
| rs4997561 | 0.88[CEU][hapmap];0.85[YRI][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs6919587 | 0.97[ASN][1000 genomes] |
| rs766153 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs7744528 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| BACH2 | Proximal transcriptional regulation |
| BACH2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014