SNP Report
Basic Infomation
| Name | rs10944480 dbSNP |
|---|---|
| Location | chr:6,90912950 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 17)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10806425 | 0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs10944481 | 0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs12110780 | 1.00[ASN][1000 genomes] |
| rs12526057 | 1.00[ASN][1000 genomes] |
| rs12528427 | 1.00[ASN][1000 genomes] |
| rs1319433 | 0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs16882568 | 0.88[ASN][1000 genomes] |
| rs17712288 | 0.86[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs2064870 | 0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs2501718 | 0.88[ASN][1000 genomes] |
| rs34460816 | 1.00[ASN][1000 genomes] |
| rs3734660 | 0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs4706359 | 0.93[ASN][1000 genomes] |
| rs4706360 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4997561 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs766153 | 0.86[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs7744528 | 0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| BACH2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014