SNP Report
Basic Infomation
| Name | rs1240697 dbSNP |
|---|---|
| Location | chr:1,1376567 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 13)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11485865 | 0.92[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs11485866 | 0.91[AMR][1000 genomes];0.83[ASN][1000 genomes] |
| rs1153092 | 0.89[AMR][1000 genomes] |
| rs1153094 | 0.89[AMR][1000 genomes] |
| rs1240695 | 0.91[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs1240698 | 0.92[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs1240699 | 0.85[ASN][1000 genomes] |
| rs1240701 | 0.87[AMR][1000 genomes] |
| rs1312568 | 0.87[AMR][1000 genomes] |
| rs13683 | 0.90[ASN][1000 genomes] |
| rs1892289 | 0.80[AMR][1000 genomes] |
| rs2242392 | 0.81[ASN][1000 genomes] |
| rs3843249 | 0.80[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| VWA1 | Proximal transcriptional regulation |
| CCNL2 | Distal transcriptional regulation |
| ENSG00000224870 | Distal transcriptional regulation |
| ATAD3C | Distal transcriptional regulation |
| ENSG00000223663 | Distal transcriptional regulation |
| ENSG00000264293 | Distal transcriptional regulation |
| MRPL20 | Distal transcriptional regulation |
| ATAD3B | Distal transcriptional regulation |
| MIR21 | Distal transcriptional regulation |
| VWA1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014