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rVarBase
SNP Report
Basic Infomation
Name
rs2242392  
dbSNP
Location
chr:1,1374286
Allele
C/T
LD-proxy of rSNPs(r
2
>0.8) (count: 2)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs1240697
0.81[ASN][1000 genomes]
rs13683
0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rSNP related genes
Symbol
Regulation type
ENSG00000225285
Proximal transcriptional regulation
CCNL2
Distal transcriptional regulation
ENSG00000224870
Distal transcriptional regulation
ENSG00000264293
Distal transcriptional regulation
MRPL20
Distal transcriptional regulation
MIR21
Distal transcriptional regulation
VWA1
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)