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rVarBase
SNP Report
Basic Infomation
Name
rs1153094  
dbSNP
Location
chr:1,1380620
Allele
A/G
LD-proxy of rSNPs(r
2
>0.8) (count: 11)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs11485865
0.88[AMR][1000 genomes]
rs11485866
0.87[AMR][1000 genomes]
rs1153092
1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1240695
0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1240697
0.89[AMR][1000 genomes]
rs1240698
0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1240701
0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1312568
0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1892289
0.84[AMR][1000 genomes]
rs4590
0.82[EUR][1000 genomes]
rs873926
0.81[AMR][1000 genomes]
rSNP related genes
Symbol
Regulation type
ATAD3C
Proximal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)