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rVarBase
SNP Report
Basic Infomation
Name
rs11485865  
dbSNP
Location
chr:1,1384295
Allele
G/A
LD-proxy of rSNPs(r
2
>0.8) (count: 8)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs11485866
0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1153092
0.88[AMR][1000 genomes]
rs1153094
0.88[AMR][1000 genomes]
rs1240695
0.87[AMR][1000 genomes]
rs1240697
0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1240698
0.86[AMR][1000 genomes]
rs1240701
0.84[AMR][1000 genomes]
rs1312568
0.88[AMR][1000 genomes]
rSNP related genes
Symbol
Regulation type
ATAD3C
Proximal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)