SNP Report

Basic Infomation

Name	rs1229578 dbSNP
Location	chr:10,93851714
Allele	T/C

LD-proxy of rSNPs(r²>0.8) (count: 37)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10786029	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.91[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10786031	0.80[ASN][1000 genomes]
rs10786033	0.80[ASN][1000 genomes]
rs10882028	0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs10882042	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs1099379	0.90[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1229579	0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1622656	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.92[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1711849	0.95[ASN][1000 genomes]
rs1776209	1.00[YRI][hapmap]
rs2767654	0.87[ASN][1000 genomes]
rs3781229	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs3824734	0.90[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap]
rs4642988	0.86[ASN][1000 genomes]
rs4933227	0.90[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs4933228	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs6583804	0.86[ASN][1000 genomes]
rs701844	0.91[ASN][1000 genomes]
rs701846	0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7078559	0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs7087501	0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs7090737	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs7091853	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs7897555	0.80[ASN][1000 genomes]
rs7919840	0.84[ASN][1000 genomes]
rs7920520	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs833385	0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs855697	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs855698	0.92[ASN][1000 genomes]
rs855699	0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs855702	0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs855703	0.92[ASN][1000 genomes]
rs855704	0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs855706	0.85[ASN][1000 genomes]
rs855707	0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs855708	0.94[ASN][1000 genomes]
rs855710	0.92[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
CPEB3	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 4)

eQTL related gene	Source
PIPSL	SCAN
LIPM	SCAN
TNKS2	SCAN
RNLS	SCAN