SNP Report
Basic Infomation
| Name | rs833385 dbSNP |
|---|---|
| Location | chr:10,93831646 |
| Allele | C/G |
LD-proxy of rSNPs(r2>0.8) (count: 53)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10786029 | 0.95[CHB][hapmap];0.91[JPT][hapmap];0.80[ASN][1000 genomes] |
| rs10786031 | 0.85[AMR][1000 genomes] |
| rs10786033 | 0.84[AMR][1000 genomes] |
| rs10882028 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs10882042 | 0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs1099379 | 1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs11186755 | 1.00[YRI][hapmap] |
| rs1137825 | 1.00[YRI][hapmap] |
| rs1229578 | 0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes] |
| rs1229579 | 0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs12413858 | 1.00[YRI][hapmap] |
| rs12571564 | 1.00[YRI][hapmap] |
| rs12763600 | 1.00[YRI][hapmap] |
| rs12774665 | 1.00[YRI][hapmap] |
| rs1622656 | 0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes] |
| rs1711849 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs1971471 | 0.83[AMR][1000 genomes] |
| rs2676817 | 1.00[YRI][hapmap] |
| rs2676819 | 1.00[YRI][hapmap] |
| rs2676820 | 1.00[YRI][hapmap] |
| rs2676822 | 1.00[YRI][hapmap] |
| rs2767654 | 0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs2792022 | 1.00[YRI][hapmap] |
| rs2797639 | 1.00[YRI][hapmap] |
| rs3781229 | 0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs3824734 | 0.89[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes] |
| rs4642988 | 0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs4933227 | 1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs4933228 | 0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes] |
| rs4933229 | 0.81[AMR][1000 genomes] |
| rs4933705 | 1.00[YRI][hapmap] |
| rs4933706 | 1.00[YRI][hapmap] |
| rs6583804 | 0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs701844 | 0.90[ASN][1000 genomes] |
| rs701846 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs7078559 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs7087501 | 0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs7090737 | 0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.80[ASN][1000 genomes] |
| rs7091853 | 0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes] |
| rs7908721 | 0.81[AMR][1000 genomes] |
| rs7919840 | 0.82[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs7920520 | 0.95[CHB][hapmap];1.00[JPT][hapmap] |
| rs833367 | 1.00[YRI][hapmap] |
| rs833372 | 1.00[YRI][hapmap] |
| rs833384 | 1.00[YRI][hapmap] |
| rs855698 | 0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs855699 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs855702 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs855703 | 0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs855704 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs855707 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs855708 | 0.86[ASN][1000 genomes] |
| rs855710 | 0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000252993 | Proximal transcriptional regulation |
| CPEB3 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014