SNP Report

Basic Infomation

Name	rs12242580 dbSNP
Location	chr:10,82340652
Allele	G/A

LD-proxy of rSNPs(r²>0.8) (count: 55)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11186147	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs11186149	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186203	1.00[CEU][hapmap];0.88[YRI][hapmap];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186218	1.00[CEU][hapmap];0.88[YRI][hapmap];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12240624	1.00[ASN][1000 genomes]
rs12240965	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12241017	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12243395	0.89[CEU][hapmap];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12246043	1.00[CEU][hapmap];0.82[YRI][hapmap];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12248524	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12256937	1.00[ASN][1000 genomes]
rs12258799	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12265331	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12265354	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12266780	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12266971	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17105302	1.00[ASN][1000 genomes]
rs17107060	0.82[YRI][hapmap]
rs17107064	0.89[YRI][hapmap]
rs2880601	1.00[ASN][1000 genomes]
rs41300223	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs45526031	1.00[ASN][1000 genomes]
rs57852406	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58411552	1.00[ASN][1000 genomes]
rs60366349	1.00[ASN][1000 genomes]
rs61188968	1.00[ASN][1000 genomes]
rs61411102	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72805709	1.00[ASN][1000 genomes]
rs72805712	1.00[ASN][1000 genomes]
rs72805715	1.00[ASN][1000 genomes]
rs72824337	1.00[ASN][1000 genomes]
rs72824338	1.00[ASN][1000 genomes]
rs73305111	1.00[ASN][1000 genomes]
rs73305115	1.00[ASN][1000 genomes]
rs73305118	1.00[ASN][1000 genomes]
rs73305120	1.00[ASN][1000 genomes]
rs73305127	1.00[ASN][1000 genomes]
rs73305130	1.00[ASN][1000 genomes]
rs73305132	1.00[ASN][1000 genomes]
rs73305140	1.00[ASN][1000 genomes]
rs73305142	1.00[ASN][1000 genomes]
rs73305144	1.00[ASN][1000 genomes]
rs73309230	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73309245	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs74143168	1.00[ASN][1000 genomes]
rs7894153	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7895413	1.00[ASN][1000 genomes]
rs7897697	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7906548	1.00[ASN][1000 genomes]
rs7906605	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7915068	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs7915576	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs7921558	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs7922492	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7923730	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
SH2D4B	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)