SNP Report
Basic Infomation
| Name | rs73309230 dbSNP |
|---|---|
| Location | chr:10,82352877 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 49)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11186149 | 1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11186203 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11186218 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12240624 | 1.00[ASN][1000 genomes] |
| rs12240965 | 1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12241017 | 1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12242580 | 1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12243395 | 0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12246043 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12248524 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12256937 | 1.00[ASN][1000 genomes] |
| rs12258799 | 0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12265331 | 1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12265354 | 0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12266780 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12266971 | 1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17105302 | 1.00[ASN][1000 genomes] |
| rs2880601 | 1.00[ASN][1000 genomes] |
| rs41300223 | 0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs45526031 | 1.00[ASN][1000 genomes] |
| rs57852406 | 0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs58411552 | 1.00[ASN][1000 genomes] |
| rs60366349 | 1.00[ASN][1000 genomes] |
| rs61188968 | 1.00[ASN][1000 genomes] |
| rs61411102 | 1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72805709 | 1.00[ASN][1000 genomes] |
| rs72805712 | 1.00[ASN][1000 genomes] |
| rs72805715 | 1.00[ASN][1000 genomes] |
| rs72824337 | 1.00[ASN][1000 genomes] |
| rs72824338 | 1.00[ASN][1000 genomes] |
| rs73305111 | 1.00[ASN][1000 genomes] |
| rs73305115 | 1.00[ASN][1000 genomes] |
| rs73305118 | 1.00[ASN][1000 genomes] |
| rs73305120 | 1.00[ASN][1000 genomes] |
| rs73305127 | 1.00[ASN][1000 genomes] |
| rs73305130 | 1.00[ASN][1000 genomes] |
| rs73305132 | 1.00[ASN][1000 genomes] |
| rs73305140 | 1.00[ASN][1000 genomes] |
| rs73305142 | 1.00[ASN][1000 genomes] |
| rs73305144 | 1.00[ASN][1000 genomes] |
| rs73309245 | 0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs74143168 | 1.00[ASN][1000 genomes] |
| rs7894153 | 0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7895413 | 1.00[ASN][1000 genomes] |
| rs7897697 | 0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7906548 | 1.00[ASN][1000 genomes] |
| rs7906605 | 0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7922492 | 0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7923730 | 0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SH2D4B | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014