SNP Report
Basic Infomation
| Name | rs12242132 dbSNP |
|---|---|
| Location | chr:10,35542918 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 19)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1018497 | 0.81[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs12098425 | 0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs12255327 | 0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs12413630 | 0.84[ASN][1000 genomes] |
| rs16935907 | 0.82[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs16935909 | 0.81[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs16935910 | 0.81[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs2295415 | 0.82[ASN][1000 genomes] |
| rs3740082 | 0.81[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs4007273 | 0.87[ASN][1000 genomes] |
| rs4102764 | 0.93[ASN][1000 genomes] |
| rs4102765 | 0.85[EUR][1000 genomes] |
| rs4102767 | 0.81[AFR][1000 genomes];0.89[ASN][1000 genomes] |
| rs4244996 | 0.87[ASN][1000 genomes] |
| rs55972637 | 0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs59428109 | 0.83[ASN][1000 genomes] |
| rs7069103 | 0.84[ASN][1000 genomes] |
| rs73262832 | 0.81[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs7921820 | 0.87[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000200097 | Proximal transcriptional regulation |
| CCNY | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014