SNP Report
Basic Infomation
| Name | rs12148044 dbSNP |
|---|---|
| Location | chr:14,69214219 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 19)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1051533 | 0.91[MEX][hapmap] |
| rs11851414 | 0.91[MEX][hapmap] |
| rs12147199 | 0.84[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs17757282 | 1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs194763 | 0.84[GIH][hapmap] |
| rs56082161 | 0.92[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs56095181 | 0.92[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs58638884 | 0.84[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs6573856 | 1.00[CHD][hapmap] |
| rs72731526 | 0.89[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs72731527 | 0.89[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs72731529 | 0.89[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs72731531 | 0.84[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs72731532 | 0.82[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs72731535 | 0.82[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs72731537 | 0.82[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs72731538 | 0.82[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs72731539 | 0.84[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs735292 | 0.84[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ZFP36L1 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014