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rVarBase
SNP Report
Basic Infomation
Name
rs6573856  
dbSNP
Location
chr:14,69205557
Allele
A/G
LD-proxy of rSNPs(r
2
>0.8) (count: 10)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs12148044
1.00[CHD][hapmap]
rs168964
1.00[JPT][hapmap]
rs17757282
1.00[CHD][hapmap];1.00[JPT][hapmap]
rs194763
1.00[CEU][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs194773
1.00[JPT][hapmap]
rs194781
0.82[GIH][hapmap];1.00[JPT][hapmap]
rs194782
0.82[GIH][hapmap];1.00[JPT][hapmap]
rs381336
1.00[JPT][hapmap]
rs409633
1.00[JPT][hapmap]
rs735292
1.00[JPT][hapmap]
rSNP related genes
Symbol
Regulation type
ENSG00000207089
Proximal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 4)
eQTL related gene
Source
AUTS2
seeQTL
SNORD56B
SCAN
FUT8
SCAN
FAM71D
SCAN