SNP Report
Basic Infomation
| Name | rs11851414 dbSNP |
|---|---|
| Location | chr:14,69259502 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 12)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10139199 | 0.87[GIH][hapmap] |
| rs1051533 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11158763 | 1.00[JPT][hapmap] |
| rs11847049 | 1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12148044 | 0.91[MEX][hapmap] |
| rs17757282 | 0.91[MEX][hapmap] |
| rs2164627 | 0.83[EUR][1000 genomes] |
| rs4899260 | 0.87[GIH][hapmap] |
| rs4902649 | 0.89[YRI][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs57786342 | 0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72731554 | 0.88[EUR][1000 genomes] |
| rs8019383 | 0.87[GIH][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ZFP36L1 | Proximal transcriptional regulation |
| RNU5E-4P | Distal transcriptional regulation |
| ENSG00000235910 | Distal transcriptional regulation |
| TPP2 | Distal transcriptional regulation |
| MIR4733 | Distal transcriptional regulation |
| NF1 | Distal transcriptional regulation |
| ACTB | Distal transcriptional regulation |
| ZZZ3 | Distal transcriptional regulation |
| EXO1 | Distal transcriptional regulation |
| HEXA | Distal transcriptional regulation |
| ENSG00000260729 | Distal transcriptional regulation |
| HEXA-AS1 | Distal transcriptional regulation |
| ENSG00000262165 | Distal transcriptional regulation |
| PLD2 | Distal transcriptional regulation |
| ENSG00000242622 | Distal transcriptional regulation |
| ENSG00000212195 | Distal transcriptional regulation |
| MIR21 | Distal transcriptional regulation |
| ENSG00000203499 | Distal transcriptional regulation |
| LGALS3 | Distal transcriptional regulation |
| RAD51B | Distal transcriptional regulation |
| ENSG00000259038 | Distal transcriptional regulation |
| RAP1B | Distal transcriptional regulation |
| FAM222A | Distal transcriptional regulation |
| MIR22HG | Distal transcriptional regulation |
| WDR81 | Distal transcriptional regulation |
| EXOSC7 | Distal transcriptional regulation |
| ZFYVE26 | Distal transcriptional regulation |
| ENSG00000258623 | Distal transcriptional regulation |
| ZFP36L1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| KIAA0247 | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014