SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 7)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1051533	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11158763	1.00[JPT][hapmap]
rs11851414	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2164627	0.83[EUR][1000 genomes]
rs4902649	0.93[YRI][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs57786342	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72731554	0.87[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
ZFP36L1	Proximal transcriptional regulation
RNU5E-4P	Distal transcriptional regulation
ENSG00000235910	Distal transcriptional regulation
MIR4733	Distal transcriptional regulation
NF1	Distal transcriptional regulation
ACTB	Distal transcriptional regulation
EXO1	Distal transcriptional regulation
HEXA	Distal transcriptional regulation
ENSG00000260729	Distal transcriptional regulation
HEXA-AS1	Distal transcriptional regulation
ENSG00000262165	Distal transcriptional regulation
PLD2	Distal transcriptional regulation
ENSG00000212195	Distal transcriptional regulation
MIR21	Distal transcriptional regulation
ENSG00000203499	Distal transcriptional regulation
LGALS3	Distal transcriptional regulation
RAD51B	Distal transcriptional regulation
ENSG00000259038	Distal transcriptional regulation
RAP1B	Distal transcriptional regulation
FAM222A	Distal transcriptional regulation
MIR22HG	Distal transcriptional regulation
WDR81	Distal transcriptional regulation
ZFYVE26	Distal transcriptional regulation
ENSG00000258623	Distal transcriptional regulation
ZFP36L1	RNA binding protein mediated regulation

rSNP related regulatory elements

eQTL evidence (count: 0)