SNP Report

Basic Infomation

Name	rs12096422 dbSNP
Location	chr:1,1110420
Allele	T/C

LD-proxy of rSNPs(r²>0.8) (count: 23)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11260535	0.81[EUR][1000 genomes]
rs11260536	0.89[ASN][1000 genomes]
rs11260537	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11260538	0.84[AFR][1000 genomes]
rs11260539	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11260540	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11260541	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11260542	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11260543	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11260544	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11260545	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12058450	1.00[ASN][1000 genomes]
rs12092254	1.00[ASN][1000 genomes]
rs12097131	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12097428	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28613513	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5010604	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5010605	0.84[AFR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5010606	0.82[AFR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5010608	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60024177	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6668667	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74045197	0.96[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
TTLL10	Proximal transcriptional regulation
MIR200B	Distal transcriptional regulation
MIR200A	Distal transcriptional regulation
TTLL10-AS1	Distal transcriptional regulation
TTLL10	Distal transcriptional regulation
SDF4	Distal transcriptional regulation
TNFRSF4	Distal transcriptional regulation
TTLL10-AS1	RNA binding protein mediated regulation
TTLL10	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)