SNP Report
Basic Infomation
| Name | rs11260540 dbSNP |
|---|---|
| Location | chr:1,1109953 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 21)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11260536 | 0.84[ASN][1000 genomes] |
| rs11260537 | 0.96[EUR][1000 genomes] |
| rs11260539 | 1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs11260541 | 0.98[ASN][1000 genomes] |
| rs11260542 | 0.91[ASN][1000 genomes] |
| rs11260543 | 1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs11260544 | 0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs11260545 | 0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs12058450 | 0.91[ASN][1000 genomes] |
| rs12092254 | 0.87[AMR][1000 genomes];0.91[ASN][1000 genomes] |
| rs12096422 | 0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs12097131 | 0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs12097428 | 1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs28613513 | 0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs5010604 | 0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs5010605 | 0.86[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs5010606 | 0.86[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs5010608 | 0.86[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs60024177 | 0.91[ASN][1000 genomes] |
| rs6668667 | 1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs74045197 | 0.94[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| C1orf159 | Distal transcriptional regulation |
| MIR200B | Distal transcriptional regulation |
| MIR200A | Distal transcriptional regulation |
| TTLL10-AS1 | Distal transcriptional regulation |
| TTLL10 | Distal transcriptional regulation |
| SDF4 | Distal transcriptional regulation |
| TNFRSF4 | Distal transcriptional regulation |
| TTLL10-AS1 | RNA binding protein mediated regulation |
| TTLL10 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014