SNP Report
Basic Infomation
| Name | rs11260538 dbSNP |
|---|---|
| Location | chr:1,1109653 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 13)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11260536 | 0.91[EUR][1000 genomes] |
| rs11260537 | 0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11260541 | 0.82[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs11260542 | 0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs11260544 | 0.84[AFR][1000 genomes] |
| rs11260545 | 0.84[AFR][1000 genomes] |
| rs12058450 | 0.92[EUR][1000 genomes] |
| rs12092254 | 0.82[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs12096422 | 0.84[AFR][1000 genomes] |
| rs5010604 | 0.82[AMR][1000 genomes] |
| rs5010605 | 0.92[AFR][1000 genomes] |
| rs5010606 | 0.90[AFR][1000 genomes] |
| rs60024177 | 0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| TTLL10 | Proximal transcriptional regulation |
| C1orf159 | Distal transcriptional regulation |
| MIR200B | Distal transcriptional regulation |
| MIR200A | Distal transcriptional regulation |
| TTLL10-AS1 | Distal transcriptional regulation |
| TTLL10 | Distal transcriptional regulation |
| SDF4 | Distal transcriptional regulation |
| TNFRSF4 | Distal transcriptional regulation |
| TTLL10-AS1 | RNA binding protein mediated regulation |
| TTLL10 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014