SNP Report
Basic Infomation
| Name | rs11466678 dbSNP |
|---|---|
| Location | chr:1,1141723 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 24)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11466679 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11466681 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11466698 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2298213 | 0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35107976 | 0.92[ASN][1000 genomes] |
| rs3753344 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs3753346 | 0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs3753347 | 0.93[ASN][1000 genomes] |
| rs3753348 | 0.88[AMR][1000 genomes];0.87[ASN][1000 genomes] |
| rs3819001 | 0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4081335 | 0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs57260149 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs58004717 | 0.95[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs58737594 | 0.95[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs58980341 | 0.95[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs59574701 | 0.95[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs60075996 | 0.95[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs60952966 | 0.95[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs72894023 | 0.90[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs72894031 | 0.88[ASN][1000 genomes] |
| rs7544660 | 0.87[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs9727211 | 0.95[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs9727406 | 0.92[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs9730380 | 0.95[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| TNFRSF18 | Proximal transcriptional regulation |
| ENSG00000223823 | Distal transcriptional regulation |
| TTLL10-AS1 | Distal transcriptional regulation |
| TTLL10 | Distal transcriptional regulation |
| SDF4 | Distal transcriptional regulation |
| UBE2J2 | Distal transcriptional regulation |
| TNFRSF18 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014