SNP Report
Basic Infomation
| Name | rs3753348 dbSNP |
|---|---|
| Location | chr:1,1143657 |
| Allele | C/G |
LD-proxy of rSNPs(r2>0.8) (count: 16)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11466678 | 0.88[AMR][1000 genomes];0.87[ASN][1000 genomes] |
| rs11466679 | 0.88[AMR][1000 genomes];0.87[ASN][1000 genomes] |
| rs11466681 | 0.89[CHB][hapmap];0.86[JPT][hapmap];0.88[AMR][1000 genomes];0.87[ASN][1000 genomes] |
| rs11466691 | 1.00[CEU][hapmap] |
| rs11466698 | 0.87[ASN][1000 genomes] |
| rs2298209 | 0.86[JPT][hapmap] |
| rs2298213 | 0.87[ASN][1000 genomes] |
| rs35107976 | 0.83[AMR][1000 genomes];0.87[ASN][1000 genomes] |
| rs3753344 | 0.88[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs3753346 | 1.00[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs3753347 | 0.89[ASN][1000 genomes] |
| rs3813200 | 1.00[CEU][hapmap] |
| rs3819001 | 1.00[CEU][hapmap];0.89[CHB][hapmap];0.86[JPT][hapmap];0.87[ASN][1000 genomes] |
| rs4081335 | 0.83[AMR][1000 genomes];0.87[ASN][1000 genomes] |
| rs57260149 | 0.87[ASN][1000 genomes] |
| rs6668223 | 1.00[CEU][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| TNFRSF18 | Proximal transcriptional regulation |
| UBE2J2 | Distal transcriptional regulation |
| SDF4 | Distal transcriptional regulation |
| HES4 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014