SNP Report
Basic Infomation
| Name | rs58980341 dbSNP |
|---|---|
| Location | chr:1,1135107 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 27)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11466678 | 0.95[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs11466679 | 0.95[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs11466681 | 0.95[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs11466698 | 0.95[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs2298209 | 0.84[ASN][1000 genomes] |
| rs2298210 | 0.84[ASN][1000 genomes] |
| rs2298213 | 0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs35107976 | 0.82[ASN][1000 genomes] |
| rs35737009 | 0.81[ASN][1000 genomes] |
| rs3753344 | 0.92[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs3753346 | 0.92[EUR][1000 genomes] |
| rs3753347 | 0.83[ASN][1000 genomes] |
| rs3813205 | 0.80[ASN][1000 genomes] |
| rs3819001 | 0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs4081335 | 0.95[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs57260149 | 0.95[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs58004717 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs58737594 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs59574701 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs60075996 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs60952966 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72894023 | 1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72894031 | 0.96[ASN][1000 genomes] |
| rs7544660 | 1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9727211 | 0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9727406 | 1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9730380 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| MIR200A | Distal transcriptional regulation |
| MIR429 | Distal transcriptional regulation |
| ENSG00000217801 | Distal transcriptional regulation |
| TTLL10 | Distal transcriptional regulation |
| TNFRSF18 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014