SNP Report
Basic Infomation
| Name | rs11465711 dbSNP |
|---|---|
| Location | chr:2,103060092 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 30)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11465623 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11465650 | 1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11465660 | 1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11465673 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs11465689 | 1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17027293 | 1.00[JPT][hapmap] |
| rs17027295 | 1.00[JPT][hapmap] |
| rs17651485 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17772203 | 1.00[JPT][hapmap] |
| rs17821875 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2080316 | 1.00[JPT][hapmap] |
| rs41348650 | 1.00[JPT][hapmap] |
| rs56151044 | 1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62151904 | 1.00[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs62152712 | 1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6543145 | 1.00[JPT][hapmap] |
| rs6543147 | 1.00[JPT][hapmap] |
| rs6543148 | 1.00[JPT][hapmap] |
| rs6736822 | 1.00[JPT][hapmap] |
| rs6737325 | 1.00[JPT][hapmap] |
| rs6741464 | 1.00[JPT][hapmap] |
| rs6747752 | 1.00[JPT][hapmap] |
| rs6751282 | 1.00[JPT][hapmap] |
| rs6751666 | 1.00[JPT][hapmap] |
| rs6753066 | 1.00[JPT][hapmap] |
| rs6756407 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6756536 | 1.00[JPT][hapmap] |
| rs7566613 | 1.00[JPT][hapmap] |
| rs7582118 | 1.00[JPT][hapmap] |
| rs7607856 | 1.00[JPT][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000236785 | Distal transcriptional regulation |
| IL18R1 | Distal transcriptional regulation |
| IL18RAP | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014