SNP Report
Basic Infomation
| Name | rs11230556 dbSNP |
|---|---|
| Location | chr:11,60765984 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 14)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10750951 | 0.80[AFR][1000 genomes] |
| rs11230553 | 0.84[ASW][hapmap];0.89[LWK][hapmap];0.84[MEX][hapmap];0.80[MKK][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.87[AMR][1000 genomes] |
| rs11230555 | 1.00[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.80[MKK][hapmap];0.97[TSI][hapmap];0.89[YRI][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11230558 | 0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11230561 | 0.81[EUR][1000 genomes] |
| rs11230563 | 0.90[JPT][hapmap] |
| rs12418337 | 0.80[EUR][1000 genomes] |
| rs12419880 | 0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs12420028 | 0.80[EUR][1000 genomes] |
| rs28546162 | 0.80[EUR][1000 genomes] |
| rs2905517 | 0.85[YRI][hapmap] |
| rs56103919 | 0.80[EUR][1000 genomes] |
| rs61899220 | 0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72926536 | 0.80[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CD6 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 5)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014