SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 6)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11230555	0.84[ASW][hapmap];1.00[LWK][hapmap];0.84[MEX][hapmap];1.00[MKK][hapmap];0.82[TSI][hapmap];0.85[YRI][hapmap];0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11230556	0.84[ASW][hapmap];0.89[LWK][hapmap];0.84[MEX][hapmap];0.80[MKK][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs11230558	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs12419880	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2905517	0.81[YRI][hapmap]
rs61899220	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes]

rSNP related genes

Symbol	Regulation type
ENSG00000207153	Distal transcriptional regulation
CD6	RNA binding protein mediated regulation

rSNP related regulatory elements

eQTL evidence (count: 6)