SNP Report
Basic Infomation
| Name | rs11230555 dbSNP |
|---|---|
| Location | chr:11,60763134 |
| Allele | C/A |
LD-proxy of rSNPs(r2>0.8) (count: 15)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10897134 | 0.81[EUR][1000 genomes] |
| rs11230553 | 0.84[ASW][hapmap];1.00[LWK][hapmap];0.84[MEX][hapmap];1.00[MKK][hapmap];0.82[TSI][hapmap];0.85[YRI][hapmap];0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs11230556 | 1.00[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.80[MKK][hapmap];0.97[TSI][hapmap];0.89[YRI][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11230558 | 0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11230561 | 0.83[EUR][1000 genomes] |
| rs11230563 | 0.90[JPT][hapmap] |
| rs12360861 | 0.81[EUR][1000 genomes] |
| rs12418337 | 0.82[EUR][1000 genomes] |
| rs12419880 | 0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs12420028 | 0.82[EUR][1000 genomes] |
| rs28546162 | 0.82[EUR][1000 genomes] |
| rs56103919 | 0.82[EUR][1000 genomes] |
| rs61899220 | 0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61899224 | 0.81[EUR][1000 genomes] |
| rs72926536 | 0.82[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CD6 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 5)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014