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rVarBase
SNP Report
Basic Infomation
Name
rs11230563  
dbSNP
Location
chr:11,60776209
Allele
C/T
LD-proxy of rSNPs(r
2
>0.8) (count: 5)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs11230555
0.90[JPT][hapmap]
rs11230556
0.90[JPT][hapmap]
rs2074225
0.84[YRI][hapmap]
rs2074227
0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2237997
0.81[YRI][hapmap]
rSNP related genes
Symbol
Regulation type
CD6
Distal transcriptional regulation
CD6
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 4)
eQTL related gene
Source
STX3
SCAN
DTX4
SCAN
CD6
SCAN
SCGB1D1
SCAN