SNP Report
Basic Infomation
| Name | rs10920175 dbSNP |
|---|---|
| Location | chr:1,201300842 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 14)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10800772 | 0.89[ASW][hapmap];1.00[LWK][hapmap];0.96[MKK][hapmap];0.92[YRI][hapmap];0.94[AFR][1000 genomes] |
| rs12068574 | 0.85[CHB][hapmap] |
| rs12073852 | 0.85[CHB][hapmap];0.85[JPT][hapmap] |
| rs12087692 | 0.85[CHB][hapmap] |
| rs12564284 | 0.85[CHB][hapmap] |
| rs2275860 | 0.85[CHB][hapmap] |
| rs2275866 | 0.82[CHB][hapmap] |
| rs2365648 | 0.85[CHB][hapmap];0.85[JPT][hapmap] |
| rs3795630 | 0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61818257 | 0.90[EUR][1000 genomes] |
| rs61819986 | 0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61819987 | 0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61819989 | 0.81[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs7541805 | 0.97[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PKP1 | Proximal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| SIRT3 | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014