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rVarBase
SNP Report
Basic Infomation
Name
rs61819989  
dbSNP
Location
chr:1,201317031
Allele
C/T
LD-proxy of rSNPs(r
2
>0.8) (count: 6)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs10920175
0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3795630
0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61818257
0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61819986
0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61819987
0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7541805
0.91[ASN][1000 genomes]
rSNP related genes
Symbol
Regulation type
TNNT2
Distal transcriptional regulation
PKP1
Distal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)