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rVarBase
SNP Report
Basic Infomation
Name
rs10800772  
dbSNP
Location
chr:1,201300858
Allele
C/A
LD-proxy of rSNPs(r
2
>0.8) (count: 5)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs10920175
0.89[ASW][hapmap];1.00[LWK][hapmap];0.96[MKK][hapmap];0.92[YRI][hapmap];0.94[AFR][1000 genomes]
rs55808337
1.00[EUR][1000 genomes]
rs56334912
1.00[EUR][1000 genomes]
rs57040590
1.00[EUR][1000 genomes]
rs74136399
1.00[EUR][1000 genomes]
rSNP related genes
Symbol
Regulation type
PKP1
Proximal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)