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rVarBase
SNP Report
Basic Infomation
Name
rs2365648  
dbSNP
Location
chr:1,201299785
Allele
A/C
LD-proxy of rSNPs(r
2
>0.8) (count: 5)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs10920175
0.85[CHB][hapmap];0.85[JPT][hapmap]
rs1105331
0.86[CHB][hapmap]
rs3795629
0.86[CHB][hapmap]
rs6427900
0.86[CHB][hapmap]
rs7541805
0.97[EUR][1000 genomes]
rSNP related genes
Symbol
Regulation type
PKP1
Proximal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 3)
eQTL related gene
Source
PRELP
SCAN
UBE2T
SCAN
CYB5R1
SCAN