SNP Report
Basic Infomation
| Name | rs10140465 dbSNP |
|---|---|
| Location | chr:14,68545449 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 100)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10130997 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10132711 | 0.90[AFR][1000 genomes] |
| rs10134124 | 0.80[ASN][1000 genomes] |
| rs10134320 | 0.80[ASN][1000 genomes] |
| rs10134664 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes] |
| rs10135046 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes] |
| rs10135256 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes] |
| rs10137330 | 0.84[ASN][1000 genomes] |
| rs10137457 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10137712 | 0.81[ASN][1000 genomes] |
| rs10138719 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10142285 | 0.90[AFR][1000 genomes] |
| rs10143895 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10144224 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes] |
| rs10145197 | 0.84[ASN][1000 genomes] |
| rs10146719 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10146766 | 0.88[AFR][1000 genomes] |
| rs10146831 | 0.88[AFR][1000 genomes] |
| rs10149801 | 0.80[ASN][1000 genomes] |
| rs10150330 | 0.88[AFR][1000 genomes] |
| rs10150584 | 0.84[ASN][1000 genomes] |
| rs10150789 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10151123 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10873211 | 0.84[ASN][1000 genomes] |
| rs10873212 | 0.84[ASN][1000 genomes] |
| rs11158710 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11158720 | 0.92[ASN][1000 genomes] |
| rs11158721 | 0.84[ASN][1000 genomes] |
| rs11844842 | 0.84[ASN][1000 genomes] |
| rs11847339 | 0.88[ASN][1000 genomes] |
| rs11849196 | 0.84[ASN][1000 genomes] |
| rs11851597 | 0.88[ASN][1000 genomes] |
| rs11851991 | 0.94[ASN][1000 genomes] |
| rs17104774 | 0.86[AFR][1000 genomes] |
| rs17104783 | 0.88[AFR][1000 genomes] |
| rs17104786 | 0.88[AFR][1000 genomes] |
| rs17104824 | 0.90[AFR][1000 genomes] |
| rs17104829 | 0.90[AFR][1000 genomes] |
| rs17104862 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[ASN][1000 genomes] |
| rs17104863 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[ASN][1000 genomes] |
| rs17104880 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes] |
| rs17104900 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17104917 | 0.94[ASN][1000 genomes] |
| rs17104947 | 0.84[ASN][1000 genomes] |
| rs17104953 | 0.84[ASN][1000 genomes] |
| rs17104992 | 0.84[ASN][1000 genomes] |
| rs17105001 | 0.90[ASN][1000 genomes] |
| rs1951411 | 0.84[ASN][1000 genomes] |
| rs2057361 | 0.92[ASN][1000 genomes] |
| rs2180537 | 0.86[AFR][1000 genomes] |
| rs28372014 | 0.81[ASN][1000 genomes] |
| rs28434770 | 0.86[AFR][1000 genomes] |
| rs28448732 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[ASN][1000 genomes] |
| rs28516665 | 0.88[AFR][1000 genomes] |
| rs28716846 | 0.90[ASN][1000 genomes] |
| rs28757308 | 0.88[AFR][1000 genomes] |
| rs28816808 | 0.88[AFR][1000 genomes] |
| rs28869007 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28896840 | 0.88[ASN][1000 genomes] |
| rs4902534 | 0.86[AFR][1000 genomes] |
| rs4902541 | 0.90[AFR][1000 genomes] |
| rs4902548 | 0.88[ASN][1000 genomes] |
| rs60562079 | 0.88[ASN][1000 genomes] |
| rs60841871 | 0.84[ASN][1000 genomes] |
| rs6573802 | 0.84[AFR][1000 genomes] |
| rs6573806 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[ASN][1000 genomes] |
| rs7140987 | 0.90[AFR][1000 genomes] |
| rs7145089 | 0.88[ASN][1000 genomes] |
| rs7147296 | 0.86[AFR][1000 genomes] |
| rs7147522 | 0.84[ASN][1000 genomes] |
| rs7147935 | 0.80[ASN][1000 genomes] |
| rs7148799 | 0.84[ASN][1000 genomes] |
| rs7149343 | 0.88[ASN][1000 genomes] |
| rs7149460 | 0.88[AFR][1000 genomes] |
| rs7150716 | 0.84[ASN][1000 genomes] |
| rs7153470 | 0.88[AFR][1000 genomes] |
| rs7153978 | 0.88[ASN][1000 genomes] |
| rs7154228 | 0.88[ASN][1000 genomes] |
| rs7154645 | 0.88[ASN][1000 genomes] |
| rs7154725 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7155152 | 0.88[ASN][1000 genomes] |
| rs7157152 | 0.84[ASN][1000 genomes] |
| rs7157550 | 0.90[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs7157720 | 0.88[AFR][1000 genomes] |
| rs7160068 | 0.84[ASN][1000 genomes] |
| rs7161070 | 0.90[ASN][1000 genomes] |
| rs73286292 | 0.84[ASN][1000 genomes] |
| rs7359083 | 0.94[ASN][1000 genomes] |
| rs8003181 | 0.83[AFR][1000 genomes] |
| rs8007347 | 0.90[ASN][1000 genomes] |
| rs8008413 | 0.88[ASN][1000 genomes] |
| rs8011367 | 0.84[ASN][1000 genomes] |
| rs8012493 | 0.80[ASN][1000 genomes] |
| rs8013061 | 0.84[ASN][1000 genomes] |
| rs8014844 | 0.88[AFR][1000 genomes] |
| rs8015741 | 0.87[AFR][1000 genomes] |
| rs8018029 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes] |
| rs957930 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9652364 | 0.88[AFR][1000 genomes] |
| rs9672111 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ZFP36L1 | Distal transcriptional regulation |
| RAD51B | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014