SNP Report
Basic Infomation
| Name | rs10140420 dbSNP |
|---|---|
| Location | chr:14,68545648 |
| Allele | A/C |
LD-proxy of rSNPs(r2>0.8) (count: 91)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10129355 | 0.82[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs10129612 | 0.81[ASN][1000 genomes] |
| rs10130829 | 0.81[EUR][1000 genomes] |
| rs10132022 | 0.84[ASN][1000 genomes] |
| rs10133883 | 0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs10136129 | 0.81[EUR][1000 genomes] |
| rs10136868 | 0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs10137233 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10139236 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10139386 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10140097 | 0.82[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs10140282 | 0.81[EUR][1000 genomes] |
| rs10140493 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10143455 | 0.81[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs10143843 | 0.81[EUR][1000 genomes] |
| rs10151115 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1080956 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1080957 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1080958 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11158715 | 0.81[ASN][1000 genomes] |
| rs11158717 | 0.82[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs11158718 | 0.80[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs11158719 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11622243 | 0.81[EUR][1000 genomes] |
| rs11622787 | 0.82[EUR][1000 genomes] |
| rs11623355 | 0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs11623467 | 0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11623984 | 0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs11624209 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11624484 | 0.87[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs11628745 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11629073 | 0.87[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs11844529 | 0.81[EUR][1000 genomes] |
| rs11846344 | 0.81[EUR][1000 genomes] |
| rs11848187 | 0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs11850191 | 0.81[EUR][1000 genomes] |
| rs11852180 | 0.81[EUR][1000 genomes] |
| rs12432681 | 0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs12436203 | 0.80[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs12437043 | 0.87[ASN][1000 genomes] |
| rs12437178 | 0.82[EUR][1000 genomes] |
| rs13329056 | 0.82[EUR][1000 genomes] |
| rs1548264 | 0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1548265 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17104889 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17104908 | 0.86[ASN][1000 genomes] |
| rs1810639 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1980654 | 0.87[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs1980655 | 0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2093358 | 0.81[ASN][1000 genomes] |
| rs2208596 | 0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs28403941 | 0.82[EUR][1000 genomes] |
| rs28470365 | 0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs28474827 | 0.80[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs28509330 | 0.81[EUR][1000 genomes] |
| rs28652829 | 0.81[ASN][1000 genomes] |
| rs33949561 | 0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4899231 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4899232 | 0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4902540 | 0.81[EUR][1000 genomes] |
| rs4902544 | 0.82[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs4902545 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs4902547 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs57069083 | 0.91[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs57990032 | 0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs60201005 | 0.82[EUR][1000 genomes] |
| rs60471554 | 0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs6573805 | 0.82[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs6573814 | 0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs67566613 | 0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs68139749 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7150168 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs7151235 | 0.82[ASN][1000 genomes] |
| rs7154646 | 0.81[EUR][1000 genomes] |
| rs7156822 | 0.87[ASN][1000 genomes] |
| rs7157185 | 0.81[EUR][1000 genomes] |
| rs7158544 | 0.85[AFR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs7160115 | 0.81[EUR][1000 genomes] |
| rs7161069 | 0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs72725183 | 0.80[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs72725185 | 0.87[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs72725186 | 0.80[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs72725187 | 0.87[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs72725188 | 0.87[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs72725190 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs8006492 | 0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs8011621 | 0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs8014000 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs8020795 | 0.81[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs9323502 | 0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9672142 | 0.82[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ZFP36L1 | Distal transcriptional regulation |
| RAD51B | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014