SNP Report
Basic Infomation
| Name | rs9676881 dbSNP |
|---|---|
| Location | chr:19,10596780 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 12)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10408642 | 0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs1048290 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs11666263 | 0.86[CHB][hapmap] |
| rs11668429 | 0.94[ASW][hapmap];0.87[CEU][hapmap];0.89[GIH][hapmap];0.81[LWK][hapmap];0.87[MEX][hapmap];0.83[TSI][hapmap];0.90[YRI][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs11669094 | 0.97[EUR][1000 genomes] |
| rs11882133 | 0.97[EUR][1000 genomes] |
| rs12459219 | 1.00[ASN][1000 genomes] |
| rs12971603 | 0.89[EUR][1000 genomes] |
| rs12985305 | 1.00[ASN][1000 genomes] |
| rs4804135 | 0.84[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs7245388 | 0.91[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs7248408 | 0.87[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ATG4D | Distal transcriptional regulation |
| ENSG00000267197 | Distal transcriptional regulation |
| KEAP1 | Distal transcriptional regulation |
| CDKN2D | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 3)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014