SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 8)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10408642	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1048290	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11668429	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11669094	0.90[EUR][1000 genomes]
rs11882133	0.92[EUR][1000 genomes]
rs12971603	0.84[EUR][1000 genomes]
rs4804135	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9676881	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
KEAP1	Proximal transcriptional regulation
PDE4A	Distal transcriptional regulation
KEAP1	Distal transcriptional regulation
ENSG00000267197	Distal transcriptional regulation
ATG4D	Distal transcriptional regulation
QTRT1	Distal transcriptional regulation
KRI1	Distal transcriptional regulation
CDKN2D	Distal transcriptional regulation
ILF3-AS1	Distal transcriptional regulation
ILF3	Distal transcriptional regulation
S1PR5	Distal transcriptional regulation
ENSG00000238364	Distal transcriptional regulation
MIR1238	Distal transcriptional regulation
KEAP1	RNA binding protein mediated regulation

rSNP related regulatory elements

eQTL evidence (count: 0)