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rVarBase
SNP Report
Basic Infomation
Name
rs10408642  
dbSNP
Location
chr:19,10594691
Allele
A/G
LD-proxy of rSNPs(r
2
>0.8) (count: 11)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs1048290
0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11668429
0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11669094
0.95[EUR][1000 genomes]
rs11882133
0.98[EUR][1000 genomes]
rs12459219
0.98[ASN][1000 genomes]
rs12971603
0.89[EUR][1000 genomes]
rs12985305
0.98[ASN][1000 genomes]
rs4804135
0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7245388
0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7248408
0.89[ASN][1000 genomes]
rs9676881
0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rSNP related genes
Symbol
Regulation type
ATG4D
Distal transcriptional regulation
KEAP1
Distal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)