SNP Report

Basic Infomation

Name	rs9368280 dbSNP
Location	chr:6,21148742
Allele	C/T

LD-proxy of rSNPs(r²>0.8) (count: 43)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10946431	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10946432	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10946433	1.00[CEU][hapmap];0.93[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16884591	1.00[CEU][hapmap];0.93[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2168985	0.93[ASN][1000 genomes]
rs28360551	0.91[EUR][1000 genomes]
rs34689265	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34844023	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56811697	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6456398	0.90[ASN][1000 genomes]
rs6456400	0.94[ASN][1000 genomes]
rs6901380	0.87[CHB][hapmap];0.94[JPT][hapmap];0.94[ASN][1000 genomes]
rs6906201	0.94[ASN][1000 genomes]
rs6913868	0.94[ASN][1000 genomes]
rs6916577	0.86[CHB][hapmap];0.93[JPT][hapmap];0.93[ASN][1000 genomes]
rs6931316	0.87[CHB][hapmap];0.82[CHD][hapmap];0.94[JPT][hapmap];0.94[ASN][1000 genomes]
rs6937555	0.87[CHB][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs7739578	0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs7739596	0.82[CHD][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs7752602	0.87[CHB][hapmap];0.85[CHD][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs7752788	0.87[CHB][hapmap];0.93[JPT][hapmap];0.94[ASN][1000 genomes]
rs9295496	0.87[CHB][hapmap];0.89[CHD][hapmap];0.94[JPT][hapmap];0.98[ASN][1000 genomes]
rs9295497	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9295499	0.85[ASN][1000 genomes]
rs9348456	0.87[CHB][hapmap];0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs9348457	0.87[CHB][hapmap];0.82[CHD][hapmap];0.94[JPT][hapmap];0.94[ASN][1000 genomes]
rs9348458	0.93[EUR][1000 genomes]
rs9350323	0.87[CHB][hapmap];0.94[JPT][hapmap];0.94[ASN][1000 genomes]
rs9350324	0.93[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs9350325	0.94[ASN][1000 genomes]
rs9356768	1.00[CEU][hapmap];0.93[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9356769	0.94[ASN][1000 genomes]
rs9356770	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9358395	0.87[CHB][hapmap];0.82[CHD][hapmap];0.94[JPT][hapmap];0.94[ASN][1000 genomes]
rs9366381	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9366382	0.94[ASN][1000 genomes]
rs9366383	0.87[CHB][hapmap];0.94[JPT][hapmap];0.94[ASN][1000 genomes]
rs9366384	0.94[ASN][1000 genomes]
rs9368281	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9368282	0.91[ASN][1000 genomes]
rs9368283	0.87[CHB][hapmap];0.82[CHD][hapmap];0.94[JPT][hapmap];0.94[ASN][1000 genomes]
rs9368284	0.93[EUR][1000 genomes]
rs9368285	0.95[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
CDKAL1	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)