SNP Report
Name | rs9368280   dbSNP |
---|---|
Location | chr:6,21148742 |
Allele | C/T |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs10946431 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs10946432 | 1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs10946433 | 1.00[CEU][hapmap];0.93[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs16884591 | 1.00[CEU][hapmap];0.93[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs2168985 | 0.93[ASN][1000 genomes] |
rs28360551 | 0.91[EUR][1000 genomes] |
rs34689265 | 1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs34844023 | 1.00[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs56811697 | 0.83[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs6456398 | 0.90[ASN][1000 genomes] |
rs6456400 | 0.94[ASN][1000 genomes] |
rs6901380 | 0.87[CHB][hapmap];0.94[JPT][hapmap];0.94[ASN][1000 genomes] |
rs6906201 | 0.94[ASN][1000 genomes] |
rs6913868 | 0.94[ASN][1000 genomes] |
rs6916577 | 0.86[CHB][hapmap];0.93[JPT][hapmap];0.93[ASN][1000 genomes] |
rs6931316 | 0.87[CHB][hapmap];0.82[CHD][hapmap];0.94[JPT][hapmap];0.94[ASN][1000 genomes] |
rs6937555 | 0.87[CHB][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes] |
rs7739578 | 0.94[JPT][hapmap];0.89[ASN][1000 genomes] |
rs7739596 | 0.82[CHD][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes] |
rs7752602 | 0.87[CHB][hapmap];0.85[CHD][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes] |
rs7752788 | 0.87[CHB][hapmap];0.93[JPT][hapmap];0.94[ASN][1000 genomes] |
rs9295496 | 0.87[CHB][hapmap];0.89[CHD][hapmap];0.94[JPT][hapmap];0.98[ASN][1000 genomes] |
rs9295497 | 1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs9295499 | 0.85[ASN][1000 genomes] |
rs9348456 | 0.87[CHB][hapmap];0.94[JPT][hapmap];0.89[ASN][1000 genomes] |
rs9348457 | 0.87[CHB][hapmap];0.82[CHD][hapmap];0.94[JPT][hapmap];0.94[ASN][1000 genomes] |
rs9348458 | 0.93[EUR][1000 genomes] |
rs9350323 | 0.87[CHB][hapmap];0.94[JPT][hapmap];0.94[ASN][1000 genomes] |
rs9350324 | 0.93[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes] |
rs9350325 | 0.94[ASN][1000 genomes] |
rs9356768 | 1.00[CEU][hapmap];0.93[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs9356769 | 0.94[ASN][1000 genomes] |
rs9356770 | 0.94[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs9358395 | 0.87[CHB][hapmap];0.82[CHD][hapmap];0.94[JPT][hapmap];0.94[ASN][1000 genomes] |
rs9366381 | 1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs9366382 | 0.94[ASN][1000 genomes] |
rs9366383 | 0.87[CHB][hapmap];0.94[JPT][hapmap];0.94[ASN][1000 genomes] |
rs9366384 | 0.94[ASN][1000 genomes] |
rs9368281 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs9368282 | 0.91[ASN][1000 genomes] |
rs9368283 | 0.87[CHB][hapmap];0.82[CHD][hapmap];0.94[JPT][hapmap];0.94[ASN][1000 genomes] |
rs9368284 | 0.93[EUR][1000 genomes] |
rs9368285 | 0.95[EUR][1000 genomes] |
Symbol | Regulation type |
---|---|
CDKAL1 | RNA binding protein mediated regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014