SNP Report
Name | rs9348456   dbSNP |
---|---|
Location | chr:6,21143366 |
Allele | C/A |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs10946431 | 0.85[ASN][1000 genomes] |
rs10946432 | 0.80[CHB][hapmap];0.94[JPT][hapmap];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs10946433 | 0.80[CHB][hapmap];0.83[CHD][hapmap];0.94[GIH][hapmap];0.94[JPT][hapmap];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs16884591 | 0.80[CHB][hapmap];0.94[GIH][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes] |
rs2168985 | 0.83[ASN][1000 genomes] |
rs34689265 | 0.81[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs4527692 | 0.84[JPT][hapmap] |
rs6456400 | 0.83[ASN][1000 genomes] |
rs6901380 | 0.89[JPT][hapmap];0.83[ASN][1000 genomes] |
rs6906201 | 0.83[ASN][1000 genomes] |
rs6913868 | 0.83[ASN][1000 genomes] |
rs6916577 | 0.87[JPT][hapmap];0.83[ASN][1000 genomes] |
rs6931316 | 0.89[JPT][hapmap];0.83[ASN][1000 genomes] |
rs6937555 | 0.89[JPT][hapmap];0.83[ASN][1000 genomes] |
rs7739578 | 0.89[JPT][hapmap] |
rs7739596 | 0.89[JPT][hapmap];0.80[ASN][1000 genomes] |
rs7752602 | 0.89[JPT][hapmap];0.84[ASN][1000 genomes] |
rs7752788 | 0.87[JPT][hapmap];0.83[ASN][1000 genomes] |
rs9295496 | 0.89[JPT][hapmap];0.87[ASN][1000 genomes] |
rs9295497 | 0.80[CHB][hapmap];0.94[JPT][hapmap];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs9348457 | 0.89[JPT][hapmap];0.83[ASN][1000 genomes] |
rs9350323 | 0.89[JPT][hapmap];0.83[ASN][1000 genomes] |
rs9350324 | 0.93[JPT][hapmap];0.81[ASN][1000 genomes] |
rs9350325 | 0.83[ASN][1000 genomes] |
rs9356768 | 0.80[CHB][hapmap];0.83[CHD][hapmap];0.94[GIH][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes] |
rs9356769 | 0.83[ASN][1000 genomes] |
rs9358395 | 0.88[JPT][hapmap];0.83[ASN][1000 genomes] |
rs9366381 | 0.81[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs9366382 | 0.83[ASN][1000 genomes] |
rs9366383 | 0.88[JPT][hapmap];0.83[ASN][1000 genomes] |
rs9366384 | 0.83[ASN][1000 genomes] |
rs9368280 | 0.87[CHB][hapmap];0.94[JPT][hapmap];0.89[ASN][1000 genomes] |
rs9368281 | 0.87[ASN][1000 genomes] |
rs9368282 | 0.80[ASN][1000 genomes] |
rs9368283 | 0.88[JPT][hapmap];0.83[ASN][1000 genomes] |
Symbol | Regulation type |
---|---|
CDKAL1 | RNA binding protein mediated regulation |
Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL related gene | Source |
---|---|
TMEM194A | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014