SNP Report
Basic Infomation
| Name | rs4527692 dbSNP |
|---|---|
| Location | chr:6,21160447 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 18)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1466340 | 0.85[CEU][hapmap] |
| rs6901380 | 0.84[JPT][hapmap] |
| rs6916577 | 0.88[JPT][hapmap] |
| rs6931316 | 0.84[JPT][hapmap] |
| rs6937555 | 0.84[JPT][hapmap] |
| rs7739578 | 0.84[JPT][hapmap] |
| rs7739596 | 0.84[JPT][hapmap] |
| rs7752602 | 0.84[JPT][hapmap] |
| rs7752788 | 0.82[JPT][hapmap] |
| rs9295496 | 0.84[JPT][hapmap] |
| rs9295498 | 0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs9348456 | 0.84[JPT][hapmap] |
| rs9348457 | 0.84[JPT][hapmap] |
| rs9350323 | 0.84[JPT][hapmap] |
| rs9350324 | 0.81[JPT][hapmap] |
| rs9358395 | 0.84[JPT][hapmap] |
| rs9366383 | 0.89[JPT][hapmap] |
| rs9368283 | 0.84[JPT][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CDKAL1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014