SNP Report
Basic Infomation
| Name | rs9356770 dbSNP |
|---|---|
| Location | chr:6,21164249 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 16)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10946431 | 0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs10946432 | 0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs10946433 | 0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs16884591 | 0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs28360551 | 0.93[EUR][1000 genomes] |
| rs34689265 | 0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs34844023 | 1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs56811697 | 0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs9295497 | 0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs9348458 | 0.98[EUR][1000 genomes] |
| rs9356768 | 0.94[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs9366381 | 0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs9368280 | 0.94[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs9368281 | 0.94[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs9368284 | 0.98[EUR][1000 genomes] |
| rs9368285 | 0.96[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CDKAL1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014