SNP Report
Name | rs907611   dbSNP |
---|---|
Location | chr:11,1874072 |
Allele | G/A |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs11041476 | 1.00[CEU][hapmap];0.94[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs11041487 | 0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs55840650 | 0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs56014530 | 0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs56344095 | 0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs61868760 | 0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs61868761 | 0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs7929314 | 0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs7943060 | 0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs907613 | 1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.93[JPT][hapmap];0.95[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Symbol | Regulation type |
---|---|
LSP1 | Proximal transcriptional regulation |
MIR4298 | Distal transcriptional regulation |
MRPL23-AS1 | Distal transcriptional regulation |
ENSG00000232987 | Distal transcriptional regulation |
H19 | Distal transcriptional regulation |
MIR675 | Distal transcriptional regulation |
Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL related gene | Source |
---|---|
LOC100130938 | SCAN |
EIF3C | SCAN |
C1orf67 | SCAN |
INHBE | SCAN |
TCTEX1D2 | SCAN |
MLX | SCAN |
ZNF585A | SCAN |
ADRBK1 | SCAN |
ACTR1A | SCAN |
ZSCAN18 | SCAN |
THRA | SCAN |
PITPNB | SCAN |
TOR2A | SCAN |
PAGE2 | SCAN |
LPP | SCAN |
YIPF2 | SCAN |
SLC2A14 | SCAN |
CANX | SCAN |
UBE2Q1 | SCAN |
SLC35C1 | SCAN |
IL13RA1 | SCAN |
STBD1 | SCAN |
PPFIA1 | SCAN |
COPZ1 | SCAN |
CHRAC1 | SCAN |
LPPR2 | SCAN |
ZNF492 | SCAN |
SLC22A3 | SCAN |
ZSCAN18 | SCAN |
SCMH1 | SCAN |
TXLNA | SCAN |
SARS | SCAN |
EPDR1 | SCAN |
ZNF577 | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014