SNP Report
Basic Infomation
| Name | rs907611 dbSNP |
|---|---|
| Location | chr:11,1874072 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 10)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11041476 | 1.00[CEU][hapmap];0.94[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs11041487 | 0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs55840650 | 0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs56014530 | 0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs56344095 | 0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs61868760 | 0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs61868761 | 0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs7929314 | 0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs7943060 | 0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs907613 | 1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.93[JPT][hapmap];0.95[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| LSP1 | Proximal transcriptional regulation |
| MIR4298 | Distal transcriptional regulation |
| MRPL23-AS1 | Distal transcriptional regulation |
| ENSG00000232987 | Distal transcriptional regulation |
| H19 | Distal transcriptional regulation |
| MIR675 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 34)
| eQTL related gene | Source |
|---|---|
| LOC100130938 | SCAN |
| EIF3C | SCAN |
| C1orf67 | SCAN |
| INHBE | SCAN |
| TCTEX1D2 | SCAN |
| MLX | SCAN |
| ZNF585A | SCAN |
| ADRBK1 | SCAN |
| ACTR1A | SCAN |
| ZSCAN18 | SCAN |
| THRA | SCAN |
| PITPNB | SCAN |
| TOR2A | SCAN |
| PAGE2 | SCAN |
| LPP | SCAN |
| YIPF2 | SCAN |
| SLC2A14 | SCAN |
| CANX | SCAN |
| UBE2Q1 | SCAN |
| SLC35C1 | SCAN |
| IL13RA1 | SCAN |
| STBD1 | SCAN |
| PPFIA1 | SCAN |
| COPZ1 | SCAN |
| CHRAC1 | SCAN |
| LPPR2 | SCAN |
| ZNF492 | SCAN |
| SLC22A3 | SCAN |
| ZSCAN18 | SCAN |
| SCMH1 | SCAN |
| TXLNA | SCAN |
| SARS | SCAN |
| EPDR1 | SCAN |
| ZNF577 | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014