SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 10)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11041476	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11041487	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56014530	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56344095	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61868760	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61868761	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7929314	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7943060	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs907611	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs907613	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
LSP1	Distal transcriptional regulation
IGF2	Distal transcriptional regulation
CTSD	Distal transcriptional regulation
ENSG00000229512	Distal transcriptional regulation
ENSG00000265587	Distal transcriptional regulation
ENSG00000249086	Distal transcriptional regulation
MRPL23-AS1	Distal transcriptional regulation
ENSG00000232987	Distal transcriptional regulation
H19	Distal transcriptional regulation
MIR675	Distal transcriptional regulation
LSP1	RNA binding protein mediated regulation

rSNP related regulatory elements

eQTL evidence (count: 0)